Detection of polymorphisms from Bacillus subtilis NGS by PED

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In this section, install of Linux(Ubuntu), setup of PED and browsing of detected polymorphisms using NGS of mutant strains of Bacillus subtilis 168 are described.

Strain GP1948 (SRR7967955) is a suppressor mutant of topoisomerase A mutation.
Mutation at 2,011,091 is G to A substitution in the GltA gene.
Reference: Topoisomerase IV can functionally replace all type 1A topoisomerases in Bacillus subtilis

Install of Ubuntu

Setup and analysis of PED

For Docker users

Visualization of detected polymorphisms using IVG

Link of PED


MIYAO Akio, Ph.D ( (Family name is MIYAO)
Institute of Crop Science / NARO
2-1-2, Kannondai, Tsukuba, Ibaraki, 305-8518, Japan